PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000461.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 248aa    MW: 26358 Da    PI: 4.7716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000461.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1961111155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Itr_sc000461.1_g00011.1  61 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALSIKG 111
                              68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1361111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3262120IPR001471AP2/ERF domain
SMARTSM003801.6E-3762125IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2162120IPR016177DNA-binding domain
PROSITE profilePS5103223.56562119IPR001471AP2/ERF domain
PRINTSPR003671.9E-106374IPR001471AP2/ERF domain
CDDcd000181.90E-3063121No hitNo description
PRINTSPR003671.9E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAEAETHSSE AESYANSSSS TSPNSSMQDS VLLGPSSGGV EVKTPAKWRG KRGRESGHRH  60
PVYRGVRMRS WGKWVSEIRE PRKKSRIWLG TYPTAEMAAR AHDVAALSIK GSSAILNFPH  120
LAASLPAPTS RSPRDVQAAA AKAAAMEDLN SSSSSHSSSS LSTSASSSEC ASAATLASDE  180
LGEIIELPPL EGSVDFLESN AELNVADVAA EGWVYPPWWA SDGEEFFGYF LDQEGVSLGD  240
CVFPESFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1663119663ATERF1
3gcc_A1e-1663119663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0979203e-36BT097920.1 Soybean clone JCVI-FLGm-11H10 unknown mRNA.
GenBankFJ2284533e-36FJ228453.1 Glycine max AP2 domain-containing transcription factor 1 (AP2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241746.14e-73PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD39e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLK4C7S94e-73K4C7S9_SOLLC; Uncharacterized protein
STRINGSolyc06g066540.1.11e-72(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-47ERF family protein